| Automated Program Control Working Group | Automated Program Management Information System | Automated Program Operating Plan | Automated Program Status System | Automated Project Control System |
| Automated Project Management Information System | Automated Project Management System | Automated Project Order Form System | Automated Property Book System | Automated Property Loss Underwriting System |
| Automated Protein Annotation Tool | Automated Protocol for Evaluation of Electromagnetic Component Separation | Automated Publications Management Program | Automated Publications Preparation System | Automated Publications Production System |
| Automated Purchase Request System | Automated Purchase System | Automated Quality Assessment Program System | Automated Quality Assurance Scheduling Program | Automated Quality of Care Evaluation Support System |
| Automated Quality Organization | Automated Quality Review and Analysis Software Support | Automated Quantitative Analysis System | Automated Quarantine Engine | Automated Quasar Detection |
| Automated Radar Parameter Estimation Tool | Automated Radar Terminal System | Automated Radar Tracking System | Automated Radio Communication | Automated Radiological Management Information System |
| Automated Radioxenon Sampler/Analyzer | Automated Rail Mounted Gantry Crane | Automated Ranging and Tracking | Automated Raster Cartography System | Automated Reactor Inspection System |
| Automated Ready Supply Store System | Automated Real Estate Investment System | Automated Realtime Execution Suite | Automated Real-Time Instrumented Experimentation System | Automated Real-Time Spacecraft Navigation System |
| Automated Real Time Testing | Automated Real-Time Testing | Automated Real-Time Test System | Automated Real Time Test System | Automated Real Time Tidal Elevation System |
| Automated reasoning | Automated Reasoning | Automated Reasoning for Security Protocol Analysis | Automated Reasoning Tool | Automated Reconfiguration System |
| Automated Records Control System | Automated Records Management | Automated Records Management System | Automated Records Processing System | Automated Refueling System |
| Automated Regional Justice Information System | Automated Regional Tracking System | Automated Regression Testing | Automated Re-Hosting Manager | Automated Reiter Protein Complement Fixation Test |
| Automated Reliability, Availability and Maintainability Standard | Automated Reliability & Maintainability Measurement System | Automated Remote Job Entry | Automated Remote Time Entry System | Automated Remote Tracking Stations |
| Automated Removable Media | Automated Rendezvous and Docking | Automated Reporting and Management Information System | Automated Reporting of Accounting & Finance Activities System | Automated Reporting, Tracking, and Evaluation Management Information |
| Automated Request Management System | Automated Request to Query | Automated Requirement Measurement | Automated Requirements Computation System, Initial Provisioning | Automated Requirements Management System |
| Automated Requirements Tractability System | Automated Requisition Management System | Automated Requisition System | Automated Reset Management Tool | Automated Resource and Plan Management Information System |
| Automated Resource for Chemical Hazard Incident Evaluation | Automated Resources Directory Service | Automated Resources Group, Inc. | Automated Resources Management System | Automated Resource Tracking System |
| Automated Response Format | Automated Response System | Automated Response to Query | Automated response unit | Automated Resume Subsystem |
| Automated Retail Logistics Systems | Automated Retail Outlet System | Automated Reticle Metrology System | Automated Retirement and Integrated Extraction System | Automated Retrieval Assistant for Clinically-Relevant Evidence |
| Automated Retrieval Mail Service | Automated Retroactive Minimal Moderation | Automated Return of Unapplied Credits Service | Automated Return of Unpaid Direct Debits | Automated Reusable Components System |
| Automated Review Management System | Automated RF (Radio Frequency) and Microwave Measurement Society | Automated Ribosomal Intergenic Spacer Analysis | Automated Risk Evaluation System | Automated Road Maintenance Machine |
| Automated Robotic Maintenance System | Automated Roster Callout System | Automated Routine Testing System | Automated Routing and Completion | Automated Routing and Maintenance System |
| Automated Sample Charger/Positioner | Automated Sample Data Instrumentation System | automated sample processing unit | Automated Scanning Electron Microscope | Automated Scanning Low Energy Electron Probe |
| Automated Schedule and Reporting System | Automated Schedule Procedure | Automated Scheduling Message | Automated Scheduling, Optimisation and Planning | Automated Scheduling Tools for Range Operations |
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